Refereed Publications

• Jeffrey E. Barrick and David B. Knoester. Breseq: Identifying More Mutations From Short-Read Microbial Resequencing Data. October, 2010. In submission.
  PDF BibTeX
• Heather J. Goldsby, David B. Knoester, and Charles Ofria. Evolution of Specialization in Heterogeneous Groups. July, 2010. In submission.
  PDF BibTeX
• David B. Knoester and Philip K. McKinley. Evolution of Synchronization and Desynchronization in Digital Organisms. Journal of Artificial Life, September 2010. In press.
  PDF BibTeX
• Andres J. Ramirez, David B. Knoester, Betty H.C. Cheng, and Philip K. McKinley. Plato: A Genetic Algorithm Approach to Run-Time Reconfiguration in Autonomic Computing Systems. Journal of Cluster Computing, March 2010. In press.
  PDF
• David B. Knoester, Heather J. Goldsby, and Philip K. McKinley. Neuroevolution of Mobile Ad Hoc Networks. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), July 2010.
  PDF BibTeX
• Heather J. Goldsby, David B. Knoester, and Charles Ofria. Evolution of Division of Labor in Genetically Homogenous Groups. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), July 2010.
  PDF BibTeX
• David B. Knoester and Philip K. McKinley. Evolution of Probabilistic Consensus in Digital Organisms. Proceedings of the IEEE International Conference on Self-Adaptive and Self-Organizing Systems (SASO), September 2009.
  PDF BibTeX
• Benjamin E. Beckmann, Philip K. McKinley and David B. Knoester. Effects of Communication Impairments on Quorum Sensing. Proceedings of the IEEE International Conference on Self-Adaptive and Self-Organizing Systems (SASO), September 2009. Poster.
  PDF BibTeX
• David B. Knoester and Philip K. McKinley. Evolving Virtual Fireflies. Proceedings of the European Conference on Artificial Life (ECAL), September 2009. Proceedings not yet available.
  PDF BibTeX
• Heather J. Goldsby, David B. Knoester, Jeff Clune, Philip K. McKinley, and Charles Ofria. The Evolution of Division of Labor. Proceedings of the European Conference on Artificial Life (ECAL), September 2009. Proceedings not yet available.
  PDF BibTeX
• David B. Knoester, Andres J. Ramirez, Philip K. McKinley, and Betty H.C. Cheng. Evolution of Robust Data Distribution Among Digital Organisms. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), July 2009.
  PDF BibTeX
• Andres J. Ramirez, David B. Knoester, Betty H.C. Cheng, and Philip K. McKinley Applying Genetic Algorithms to Decision Making in Autonomic Computing Systems. Proceedings of the IEEE International Conference on Autonomic Computing (ICAC), June 2009.
  PDF BibTeX
• David B. Knoester and Philip K. McKinley. Cooperative Network Construction Using Digital Germlines. Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), July 2008.
  PDF BibTeX
• Heather J. Goldsby, Betty H.C. Cheng, Philip K. McKinley, David B. Knoester, and Charles Ofria. Digital Evolution of Behavioral Models for Autonomic Systems. Proceedings of the IEEE International Conference on Autonomic Computing (ICAC), June 2008.
  PDF BibTeX
• Philip K. McKinley, Betty H.C. Cheng, Charles Ofria, David B. Knoester, Benjamin Beckmann, and Heather Goldsby. Harnessing Digital Evolution. IEEE Computer, 41(1), January 2008.
  DOI BibTeX
• David B. Knoester, Philip K. McKinley, Benjamin Beckmann, and Charles Ofria. Directed Evolution of Communication and Cooperation in Digital Organisms. Proceedings of the European Conference on Artificial Life (ECAL), September 2007.
  PDF BibTeX
• David B. Knoester, Philip K. McKinley, and Charles Ofria. Using Group Selection to Evolve Leadership in Populations of Self-Replicating Digital Organisms. Proceedings of the ACM Genetic and Evolutionary Computation Conference (GECCO), July 2007.
  PDF BibTeX
• Benjamin Beckmann, Philip K. McKinley, David B. Knoester, and Charles Ofria. Evolution of Cooperative Information Gathering in Self-Replicating Digital Organisms. Proceedings of the IEEE International Conference on Self-Adaptive and Self-Organizing Systems (SASO), July 2007.
  PDF BibTeX
• Heather J. Goldsby, David B. Knoester, Betty H.C. Cheng, Philip K. McKinley, and Charles Ofria. Digitally Evolving Models for Dynamically Adaptive Systems. Proceedings of the ICSE Workshop on Software Engineering for Adaptive and Self-Managing Systems (SEAMS), May 2007.
  PDF BibTeX

Other

• David B. Knoester, Heather J. Goldsby, and Philip K. McKinley. Evolution of Controllers for Mobile Ad Hoc Networks. Technical Report MSU-CSE-10-9, 2010.
  PDF BibTeX
• David B. Knoester and Philip K. McKinley. Evolving Virtual Fireflies. Technical Report MSU-CSE-08-09, 2008.
  PDF BibTeX
• David B. Knoester. Using Developmental Learning for Network Intrusion Detection. Master's Thesis, Michigan State University, May 2004.
  BibTeX